Closed kwanghoon821 closed 3 years ago
Hi, I'm trying to use BSSeeker2.
First, I used bs_seeker2-build.py to build the index.
python bs_seeker2-build.py \ -f path/to/ref.fasta \ --aligner=bowtie2 \ -d outputdir.
I got many outputs(3377) C_C2T.fa C_G2A.fa chr1.data chr1_GL383518v1_alt.data chr1_GL383519v1_alt.data and so on Is this normal?
Anyway, I tried to align using the index.
I have four ".fa" format outputs C_C2T.fa C_G2A.fa W_C2T.fa W_G2A.fa
What should I use file for alignment?
Yes, it is normal. Just keep these files, and specify the folder if not build using default parameter.
Best, Weilong Guo
@guoweilong Thank you!
Hi, I'm trying to use BSSeeker2.
First, I used bs_seeker2-build.py to build the index.
python bs_seeker2-build.py \ -f path/to/ref.fasta \ --aligner=bowtie2 \ -d outputdir.
I got many outputs(3377) C_C2T.fa C_G2A.fa chr1.data chr1_GL383518v1_alt.data chr1_GL383519v1_alt.data and so on Is this normal?
Anyway, I tried to align using the index.
I have four ".fa" format outputs C_C2T.fa C_G2A.fa W_C2T.fa W_G2A.fa
What should I use file for alignment?