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BSSeeker / BSseeker2

A versatile aligning pipeline for bisulfite sequencing data
http://pellegrini.mcdb.ucla.edu/BS_Seeker2/
MIT License
60 stars 25 forks source link

Compatibility with bismark? #46

Closed weishwu closed 2 years ago

weishwu commented 2 years ago

I wonder if I can run bs_seeker2-call_methylation.py with Bismark alignments. Is there any tweaking I need to do or it's simply not recommended? Thanks.

guoweilong commented 2 years ago

Hi Weisheng,

bs_seeker2-call_methylation.py was designed for BS-Seeker2's alignment, and is not compatible with Bismark alignment.

Weilong

At 2022-04-22 04:25:44, "Weisheng Wu" @.***> wrote:

I wonder if I can run bs_seeker2-call_methylation.py with Bismark alignments. Is there any tweaking I need to do or it's simply not recommended? Thanks.

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weishwu commented 2 years ago

That's what I thought. Thanks!