Pipeline for whole genome sequencing analysis for outbreak detection and characterization of foodborne bacteria
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BUG: Trimmomatic path points to INPUT_DATA instead of results_dir/raw #1
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saramonzon opened 6 years ago
In trimmomatic input_path is wrong
/processing_Data/bioinformatics/services_and_colaborations/CNM/bacteriologia/SRVCNM060_20180125_ECOLI06_SS_S/RAW//SS-1468-16_R2.fastq
Check paths in scripts trimmomatic, mapping, fastqc, etc..