[X] This comment contains a description of changes (with reason).
[ ] Make sure your code lints (black and flake8).
If a new tamplate was added make sure:
[ ] Template's schema is added in templates/services.json.
[ ] Template's pipeline's documentation in assets/reports/md/template.md is added.
[ ] Results Documentation in assets/reports/results/template.md is updated.
[X] CHANGELOG.md is updated.
[ ] README.md is updated (including new tool citations and authors/contributors).
[ ] If you know a new user was added to the SFTP, make sure you added it to templates/sftp_user.json
PR description
All templates were modified so that, if a conda environment was being used, this environment is replaced by the corresponding singularity image. Furthermore, if module load was used initially in a template, the loaded module is also replaced with the appropriate singularity image, with the same version of the software being employed.
PR checklist
black and flake8).templates/services.json.assets/reports/md/template.mdis added.assets/reports/results/template.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).templates/sftp_user.jsonPR description
All templates were modified so that, if a conda environment was being used, this environment is replaced by the corresponding singularity image. Furthermore, if
module loadwas used initially in a template, the loaded module is also replaced with the appropriate singularity image, with the same version of the software being employed.This PR addresses #55 partially.