Release 3.0.0

[saramonzon]

Release Note for version 3.0.0

Enhances and improvements

• Installation script improvements
• Added a proper demo system using docker compose. See in readme.
• Added custom names to db tables
• Refactor: removed "iSkyLIMS_" from modules names
• Refactor: changed camelCase to snake_case to every variable (camelCase only for class names)
• Refactor: new import sorting + relative path imports
• Record samples view have been rewrited
• Added jsonschema to the environment
• Sample projects fields can be defined using a json schema
• Improvements in Wetlab API:
  • Create sample fields defined in sample project
  • Allow to display/update laboratory information
• Resolution states now match service state
• New parameters available in config table
  • USER_CENTER_USED_FOR_NAMING_SERVICE
  • ABBREVIATION_USED_FOR_SERVICE_REQUEST
  • Better table visualization using cdn tables
  • Searching improvements in table allowing to search for columns
  • Statistics visualization improvements.
  • Possibility to request delivery information via api
  • Crontab process revisited:
    • New error types added
    • Adjustments when waiting for run files included (bcl2fastq processing)
    • Crontab is now activated via web and removed from installation script
  • Improvements at:
  • Login page
  • Contact page
  • Service display page

Solved issues/requests:

• 57 Resolution states

• 70 Service name in Requesting Services Application

• 74 Available service must have service_id

• 81 Configure the service name in DRYLAB

• 99 If the run created in iSkyLIMS_wetlab already exists, the projects are duplicated when the run is loaded.

• 101 error in Modify protocol Fields

• 102 new parameter for protocol that already has records in the LibParametersValues, fails to display sample information

• 103 Search services working as search runs with the sharing option

• 105 implement on wetlab API to receive a list of sample names and return the run name

• 106 Run date not saved for MiSeq if run is in defined state

• 107 Allow to define laboratory data from json file

• 108 Create an API request to summarize the samples defined.

• 113 Error looking for a service

• 114 Display number of samples requested for a service

• 115 Can't record samples

• 116 Problem when 2 resolution have the same availableservices selected

• 117 Possibility to request delivery information

• 119 Added date start and date end to /drylab/api/services/ as parameters

• 121 Custom contact page

• 122 Now services center is filled with the center where the user belongs in the moment is requested so it is consistent in the future

• 123 Added configSettings table to initial upload tables so it is included in the initial / upgrade install.

• 125 Delivery date is now autoadd

• 129 Code cleaning

• 133 Changed iSkyLIMS to iskylims

• 140 When searching a service the state select field does not show the rigth options

• 173 Solved issue in sequencerDetails

• 184 Added field name to table in sample display

• 185 and #183 some fixes and improvements in batch upload

• 188 fixes in upload services files

• 186 fixes in handlingLibrary prep

• 189 fixes in counseling and infrastructure requests

• 190 fixes in pipeline definition

• 192 removed add crontab from install script

• 200 fixed Problem with recorded runs using folder

• 199 pool creation table is now a jexcel table for multiple selection

• 201 A pool can be created even if the run already exists

• 202 samples table in service is has now a scroll bar

• 204 Added choose value option in dropdown list for kit selection

• 205 Renamed unused button in add user lot

• 206 fixed bug when displaying novaseq test run

• 207 fixed adding options to option list in project fields

• 214 fixed retrieve sample sheets file from run

• 215 Show the samples that can be included in sample sheet in library preparation

• 224 Added time when runParameters does not exists in crontab process

Other bugs solved:

• Check during crontab execution (When searching for new runs) if sample sheet has user_id in description

Third Party upgrades

• Bootstrap upgrade to version 5
• Jexcel upgrade to version 4
• jquery 3.4.6