issues while running docker command plasmidID

BU-ISCIII / plasmidID

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

https://github.com/BU-ISCIII/plasmidID/wiki

GNU General Public License v3.0

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issues while running docker command plasmidID #23

Open alarawms opened 2 years ago

alarawms commented 2 years ago

please update the the docker run parameter, the docker executable: plasmidID.sh not plasmidID

docker run -v $PWD:$PWD -w $PWD buisciii/plasmidid plasmidID.sh \ -1 test/KPN_TEST_R1.fastq.gz \ -2 test/KPN_TEST_R2.fastq.gz \ -d test/plasmids_TEST_database.fasta \ -c test/contigs_KPN_TEST.fasta \ --no-trim \ -s KPN

saramonzon commented 2 years ago

Thanks for reporting! Will fix for the next release :)