set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload to public databases, as well as analysis runs and database storage.
We still lack a proper documentation on how the bioinfo_config.json file should be created (how to name the keys, the functionalities of each field and the correlation with how it will be processed).
I think it could go in the README file just below read-bioinfo-metadata description.
We still lack a proper documentation on how the bioinfo_config.json file should be created (how to name the keys, the functionalities of each field and the correlation with how it will be processed). I think it could go in the README file just below read-bioinfo-metadata description.
_Originally posted by @Daniel-VM in https://github.com/BU-ISCIII/relecov-tools/pull/306#discussion_r1756957611_