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BU-ISCIII
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viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
https://nf-co.re/viralrecon
MIT License
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Dev
#34
svarona
closed
2 weeks ago
0
Fixing merge conflicts on #435
#33
maxulysse
closed
2 weeks ago
2
New ivar_variants_to_vcf.py
#32
Shettland
closed
1 month ago
1
New ivar_variants_to_vcf.py
#31
Shettland
closed
3 months ago
2
only download additional gtf when using that param
#30
svarona
closed
4 months ago
1
Template update for nf-core/tools v2.13.1
#29
svarona
closed
4 months ago
1
Merge Template update for nf-core/tools version 2.12
#28
svarona
closed
6 months ago
1
Dev
#27
svarona
closed
7 months ago
1
Merge Template update for nf-core/tools version 2.11.1
#26
svarona
closed
7 months ago
1
Parse assembly stats
#25
Alema91
closed
1 year ago
1
Create summary report without multiqc
#24
Alema91
closed
1 year ago
1
Analizar las 3800 secuencias
#23
Alema91
closed
2 years ago
1
Analyse Pangolin versions and compare between laboratories vs viralrecon
#22
Alema91
closed
1 year ago
4
Analyse fastq from first QC - Ion Torrent
#21
Alema91
closed
2 years ago
8
Analyse consensus fasta to describe the variance of lineages with Pangolin versions
#20
Alema91
closed
2 years ago
4
Analyse fastq from first QC - Illumina and Nanopore
#19
Alema91
closed
2 years ago
5
Run latest service SARS
#18
ErikaKvalem
closed
4 months ago
0
Documentation on SARS service
#17
ErikaKvalem
closed
4 months ago
0
Create a issue in ivar - indels
#16
Alema91
closed
2 years ago
3
Changelog v2.3 viralrecon
#15
ErikaKvalem
closed
4 months ago
1
Create a issue in Ivar - mpileup
#14
Alema91
closed
2 years ago
4
Results variant callers comparison
#13
Alema91
closed
2 years ago
5
Fix Bcftools masking reference name
#12
ErikaKvalem
closed
2 years ago
2
Data output to ENA - GSAID format and specifics
#7
ErikaKvalem
closed
2 years ago
0
Consensus comparison between bcftools, varscan and ivar consensus
#6
saramonzon
closed
2 years ago
3
General stats comparison variants all and >80/75%
#5
saramonzon
closed
2 years ago
1
Convert Rscript for long and wide table to python and add ivar and bcftools support
#4
saramonzon
closed
2 years ago
4
New functionality ivar: fix annotation for complete codons variants
#3
saramonzon
closed
2 years ago
4
Run 50 test samples with DSL2
#2
saramonzon
closed
2 years ago
0
New functionality ivar: Create script for p-value strand bias for ivar
#1
saramonzon
closed
2 years ago
2