Use builtin graph analyses packages

BUNPC / psoct_vessel_graphing

Suite of tools for segmenting vessels from PS-OCT images and then converting the segments to a graph.

1 stars 6 forks source link

Use builtin graph analyses packages #16

Closed mjhyman closed 1 year ago

mjhyman commented 1 year ago

There was a Matlab package developed in 2018 for:

identifying branch points
identifying endpoints
removing islands of pixels

This package is optimized and tested, so it should be used in place of our code for these operations.

mjhyman commented 1 year ago

The MATLAB package does not allow the user to access the edge indices. Therefore I am unable to convert from the MATLAB graph structure back to our lab's graph structure. I am closing this ticket as a result.