Thank you for developing these wonderful tools. I am new to this, so excuse my ignorance. I ran the tutorial for 1000 mixed human and mouse cells. It worked great, but I'm noticing that the rownames for the res_mat file are ensembl gene ids not gene_names. Gene names would be much informative for me in the future. I'm wondering if there is an easy to get gene_names instead of gene ids when doing the pseudoalignment. Or did I just do something wrong?
Hello,
Thank you for developing these wonderful tools. I am new to this, so excuse my ignorance. I ran the tutorial for 1000 mixed human and mouse cells. It worked great, but I'm noticing that the rownames for the res_mat file are ensembl gene ids not gene_names. Gene names would be much informative for me in the future. I'm wondering if there is an easy to get gene_names instead of gene ids when doing the pseudoalignment. Or did I just do something wrong?
Thanks in advance.