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BUStools / bustools

Tools for working with BUS files
https://bustools.github.io/
BSD 2-Clause "Simplified" License
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Mus musculus index files for RNA velocity #7

Closed ykykyksa closed 5 years ago

ykykyksa commented 5 years ago

Hi,

I would like to try RNA velocity with following your tutorial with our actual datasets derived from Drop-seq with mouse cells, but tutorial gives the files required for analyzing human cells. It would be great if you could share index files including cDNA and introns, probably used for producing figure 3 of bioRxiv paper "Modular and efficient pre-processing of single-cell RNA-seq".

Thank you for providing us opportunities to get more information from scRNA-seq data and interpret Biology there.

sbooeshaghi commented 5 years ago

The mouse RNA velocity files are below. Note that this index requires that the biological read length is of length 98bp:

https://github.com/pachterlab/MBGBLHGP_2019/releases/tag/figure_3_files