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How to generate the loom file hgForebrainGlut.loom? #3

Open princeyyadav opened 4 years ago

princeyyadav commented 4 years ago

Hey, I was following this notebook but it doesn't explain how one can generate this loom file hgForebrainGlut.loom. This file has reduced number of barcodes and genes too.

I have to use this analysis pipeline for other datasets also. So, I want to know what filtering steps have been used to reduce the dimension of the matrix and then how to generate the loom file. Any help will be highly appreciated.

Thanks!

elvirakinzina commented 4 years ago

@a3na I am also tried to understand how the loom file was generated. Did you manage to find answers? Thanks!

ekofman commented 3 years ago

Agreed....