preliminary title

An integrated framework for the protein interaction network: storage, visualization, analysis and deployment

outline

the architecture of the framework
- input
- individual components
- output
storage with neo4j database
- network info: string, kegg (license?)
- design
- Command line interface
visualization with gephi
- layout: force atlas, rotate, label adjust
- analysis (also can be done in neo4j, @bornabesic please assess which way is better for running the framework)
- modularity
- network diameter: betweenness centrality
incorporation of gene quantification
- update in neo4j database
- visual representation in gephi
webserver
deployment with docker container
a galaxy tool?
user cases