BackofenLab / CRISPRtracrRNA

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unable to run example code #2

Closed nongbaoting closed 1 year ago

nongbaoting commented 1 year ago
-> % python CRISPRtracrRNA.py --input_folder test_input_complete --temp_folder_path temp
Creating folders if necessary...
Running CRISPR array search, it may take a while...
Running CRISPR cas search, it may take a while...
        Working with 2 files 

        Working with file 1 - AAAKQV010000004.fasta
1. Searching for anti repeats
2. Filtering Anti-repeats
3. Forming initial TracrRNA candidates
4. Improving the results using CRISPRRNA-TracrRNA interaction prediction
5. Searching for the terminator sequences
6. Searching the hits with the provided tail model
Traceback (most recent call last):
  File "CRISPRtracrRNA.py", line 46, in <module>
    main()
  File "CRISPRtracrRNA.py", line 36, in main
    dict_weights=dict_weights)
  File "/dat1/apps/CRISPRtracrRNA/modules/pipelines.py", line 35, in __init__
    self._pipeline_run()
  File "/dat1/apps/CRISPRtracrRNA/modules/pipelines.py", line 142, in _pipeline_run
    cm_scan_on_candidates = CMScanOnCandidates(all_tracr_sequences_global_window, self.hmm_model)
  File "/dat1/apps/CRISPRtracrRNA/modules/hmm_model_run.py", line 18, in __init__
    self._parse_result_file()
  File "/dat1/apps/CRISPRtracrRNA/modules/hmm_model_run.py", line 65, in _parse_result_file
    with open("output_cmscan.txt") as f:
FileNotFoundError: [Errno 2] No such file or directory: 'output_cmscan.txt'