-> % python CRISPRtracrRNA.py --input_folder test_input_complete --temp_folder_path temp
Creating folders if necessary...
Running CRISPR array search, it may take a while...
Running CRISPR cas search, it may take a while...
Working with 2 files
Working with file 1 - AAAKQV010000004.fasta
1. Searching for anti repeats
2. Filtering Anti-repeats
3. Forming initial TracrRNA candidates
4. Improving the results using CRISPRRNA-TracrRNA interaction prediction
5. Searching for the terminator sequences
6. Searching the hits with the provided tail model
Traceback (most recent call last):
File "CRISPRtracrRNA.py", line 46, in <module>
main()
File "CRISPRtracrRNA.py", line 36, in main
dict_weights=dict_weights)
File "/dat1/apps/CRISPRtracrRNA/modules/pipelines.py", line 35, in __init__
self._pipeline_run()
File "/dat1/apps/CRISPRtracrRNA/modules/pipelines.py", line 142, in _pipeline_run
cm_scan_on_candidates = CMScanOnCandidates(all_tracr_sequences_global_window, self.hmm_model)
File "/dat1/apps/CRISPRtracrRNA/modules/hmm_model_run.py", line 18, in __init__
self._parse_result_file()
File "/dat1/apps/CRISPRtracrRNA/modules/hmm_model_run.py", line 65, in _parse_result_file
with open("output_cmscan.txt") as f:
FileNotFoundError: [Errno 2] No such file or directory: 'output_cmscan.txt'