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BackofenLab / CRISPRtracrRNA

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FileNotFoundError: [Errno 2] No such file or directory: 'ResultsIdentify/Complete_summary.csv' #7

Open lnguyen1991 opened 1 year ago

lnguyen1991 commented 1 year ago

I get the following errors: Creating folders if necessary... Running CRISPR array search, it may take a while... Traceback (most recent call last): File "CRISPRtracrRNA.py", line 46, in main() File "CRISPRtracrRNA.py", line 29, in main complete_tracr_search = CompleteTracrSearchWithModel(folder_output=folder_output, File "/Users/longnguyen/CRISPRtracrRNA/modules/pipelines.py", line 35, in init self._pipeline_run() File "/Users/longnguyen/CRISPRtracrRNA/modules/pipelines.py", line 44, in _pipeline_run dict_arrays = CRISPRIdentifySummaryParser(crispr_identify_summary_file).output() File "/Users/longnguyen/CRISPRtracrRNA/modules/crispr_identify_summary_parser.py", line 18, in init self._parse_file() File "/Users/longnguyen/CRISPRtracrRNA/modules/crispr_identify_summary_parser.py", line 21, in _parse_file with open(self.summary_file) as f: FileNotFoundError: [Errno 2] No such file or directory: 'ResultsIdentify/Complete_summary.csv'

Huanle commented 1 year ago

Hi @lnguyen1991 ,

Have you solved the issue. I ran into the same. It would greatly help me if you have a solution.

Cheers - Huanle

Huanle commented 1 year ago

Ok. I found the solution:

lnguyen1991 commented 1 year ago

I have not been able to fix it. Can you elaborate on how you fixed it?

Alexander-Mitrofanov commented 1 year ago

Thank you for expressing interest in our tool. We aim to implement the necessary fixes within the next two weeks.

Huanle commented 1 year ago

I have not been able to fix it. Can you elaborate on how you fixed it?

lnside tools/CRISPRidentify/, i have: CRISPRidentify -> ../../../CRISPRidentify/

Inside tools/CRISPRcasIdentifier, i have: CRISPRcasIdentifier -> ../../../CRISPRcasIdentifier-1.1.0/

CRISPRidentify and CRISPRcasIdentifier-1.1.0 were installed somewhere else.

I made programs in tools/infernal/binaries/ executable.