search

BackofenLab / GraphClust-2

A pipeline for structural clustering of RNA secondary structures
GNU General Public License v3.0
14 stars 4 forks source link

Optimizing Parameters for Larger Motif Window #73

Open sethstaller opened 1 year ago

sethstaller commented 1 year ago

Hello:

Trying to run motiffinder on larger RNA windows ~150 - 250nt. We are getting fail states at the Structure-to-GSPAN step and are unable to generate clusters.

Any advice on what parameters to fine-tune as you open up the window?