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BackofenLab / IntaRNA-benchmark

Data and scripts to benchmark IntaRNA
MIT License
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number of threads as arg in qsub call #13

Closed martin-raden closed 5 years ago

martin-raden commented 5 years ago

https://github.com/BackofenLab/IntaRNA-benchmark/blob/97596f5b4f30a140c5ed019d025a51336f9c2722/intarna-benchmark-sge.sh#L4

please test: if giving the number of threads also as qsub call argument, which one has priority?

if not working at all (specifying at both places) remove from sge script to be more flexible..

RickGelhausen commented 5 years ago

The qsub call argument has priority: qsub -pe smp 12 intarna-benchmark-sge.sh ...