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BackofenLab / IntaRNA-benchmark

Data and scripts to benchmark IntaRNA
MIT License
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insufficient checks for precomputed ED #14

Closed martin-raden closed 5 years ago

martin-raden commented 5 years ago

https://github.com/BackofenLab/IntaRNA-benchmark/blob/97596f5b4f30a140c5ed019d025a51336f9c2722/bin/calls.py#L102

will fail if q/tAccW/L (or q/tIntLenMax) are added in the call, since these alter the span for unpaired probs

best test for these parameters and report error if present.

alternatively: add another argument for the maximal interaction length needed from the precomputed ED values

RickGelhausen commented 5 years ago