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BackofenLab / IntaRNA

Efficient target prediction incorporating accessibility of interaction sites
https://backofenlab.github.io/IntaRNA/
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[helix-based] context-sensitive helix-based predictions #139

Open martin-raden opened 5 years ago

martin-raden commented 5 years ago

given the helix-based RNA-RNA interaction prediction mode, we want to apply context-sensitive length constraints.

needed:

contact: Rick Gelhausen Martin Raden

martin-raden commented 5 years ago

related: https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-1-r16

CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data