Closed veroniquevoisin closed 1 year ago
risserlin
commented
3 years ago @veroniquevoisin If you make a selection of just one cluster and right click and select App -> Annotate - create cluster you should be able to annotate just the selected cluster. Is that what you are looking for?
veroniquevoisin
commented
3 years ago yes it is what I was looking for ! Thanks!
On Mon, Nov 16, 2020 at 9:41 AM Ruth Isserlin notifications@github.com wrote:
@veroniquevoisin https://github.com/veroniquevoisin If you make a selection of just one cluster and right click and select App -> Annotate - create cluster you should be able to annotate just the selected cluster. Is that what you are looking for?
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/BaderLab/AutoAnnotateApp/issues/158#issuecomment-728104853, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABZYHS6BZHU6MGVII5633VDSQE2ZFANCNFSM4TXH2HPA .
-- Veronique Voisin, PhD
Pathway and Network Analyses for OICR Cancer Stem Cell Research Terrence Donnelly Centre for Cellular and Biomedical Research, University of Toronto, 160 College Street, Toronto, M5S3E1. https://oicr.on.ca/oicr-programs-and-platforms/innovation-programs/cancer-stem-cells/resources https://oicr.on.ca/oicr-programs-and-platforms/innovation-programs/cancer-stem-cells/resources http://baderlab.org/CSCPathwayAnalysisService http://baderlab.org
risserlin
commented
3 years ago Is the hidden edges still an issue? Or does the right click App --> create cluster fix the issue?
veroniquevoisin
commented
3 years ago it looks like it fixes the issue of the hidden edges
On Mon, Nov 16, 2020 at 9:49 AM Ruth Isserlin notifications@github.com wrote:
Is the hidden edges still an issue? Or does the right click App --> create cluster fix the issue?
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/BaderLab/AutoAnnotateApp/issues/158#issuecomment-728109457, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABZYHS2AEYUBBPXVYQSP4Z3SQE3WHANCNFSM4TXH2HPA .
-- Veronique Voisin, PhD
Pathway and Network Analyses for OICR Cancer Stem Cell Research Terrence Donnelly Centre for Cellular and Biomedical Research, University of Toronto, 160 College Street, Toronto, M5S3E1. https://oicr.on.ca/oicr-programs-and-platforms/innovation-programs/cancer-stem-cells/resources https://oicr.on.ca/oicr-programs-and-platforms/innovation-programs/cancer-stem-cells/resources http://baderlab.org/CSCPathwayAnalysisService http://baderlab.org
veroniquevoisin
commented
3 years ago actually it fixes the issue only partially as I have to manually select the clusters but if I select all nodes and right click, it it still selecting the hidden edges.
On Mon, Nov 16, 2020 at 9:50 AM veronique voisin veronique.voisin@gmail.com wrote:
it looks like it fixes the issue of the hidden edges
On Mon, Nov 16, 2020 at 9:49 AM Ruth Isserlin notifications@github.com wrote:
Is the hidden edges still an issue? Or does the right click App --> create cluster fix the issue?
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/BaderLab/AutoAnnotateApp/issues/158#issuecomment-728109457, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABZYHS2AEYUBBPXVYQSP4Z3SQE3WHANCNFSM4TXH2HPA .
-- Veronique Voisin, PhD
Pathway and Network Analyses for OICR Cancer Stem Cell Research Terrence Donnelly Centre for Cellular and Biomedical Research, University of Toronto, 160 College Street, Toronto, M5S3E1. https://oicr.on.ca/oicr-programs-and-platforms/innovation-programs/cancer-stem-cells/resources https://oicr.on.ca/oicr-programs-and-platforms/innovation-programs/cancer-stem-cells/resources http://baderlab.org/CSCPathwayAnalysisService http://baderlab.org
-- Veronique Voisin, PhD
Pathway and Network Analyses for OICR Cancer Stem Cell Research Terrence Donnelly Centre for Cellular and Biomedical Research, University of Toronto, 160 College Street, Toronto, M5S3E1. https://oicr.on.ca/oicr-programs-and-platforms/innovation-programs/cancer-stem-cells/resources https://oicr.on.ca/oicr-programs-and-platforms/innovation-programs/cancer-stem-cells/resources http://baderlab.org/CSCPathwayAnalysisService http://baderlab.org
mikekucera
commented
1 year ago Duplicate of #177
I created an enrichment map and then I reduced the number of edges using the enrichment map slide bar which resulted in hidden edges. I could therefore not use auto annotate as it was just creating one cluster. As a workaround , I created a subnetwork of only selected edges but then I lost the EM heat map table. That would be nice to be able to apply AutoAnnotate only on selected nodes and edges.