When I create summary network, how are the resulting metanodes colored?

BaderLab / AutoAnnotateApp

The AutoAnnotate Cytoscape App finds clusters of nodes and visually annotates them with semantic labels and groups.

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When I create summary network, how are the resulting metanodes colored? #170

Closed sylee20 closed 2 years ago

sylee20 commented 3 years ago

Are they colored based on average NES over all consisting nodes? Where can I get the legend with color gradient?

risserlin commented 3 years ago

I believe that depends on how they are coloured in the original network. You can directly set how the node attributes are summarized in the Group preferences pan. ( Edit --> Preferences --> Group preferences)

You can set it to take the max, min, sum value of the cluster or average. I think by default it is set to average.

To find the color gradient you can go to the style manager to see (or change the gradient):