query to download HTseq counts from the TCGA OV project

BaderLab / Cytoscape_workflows

collection of notebooks with different cytoscape workflows

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query to download HTseq counts from the TCGA OV project #2

Open veroniquevoisin opened 7 years ago

veroniquevoisin commented 7 years ago

query <- GDCquery(project = "TCGA-OV", data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantification", workflow.type = "HTSeq - Counts", legacy = FALSE) )

risserlin commented 7 years ago

Hi Veronique, Do you want the code updated to this or are these other options you want added? Ruth