BaderLab / EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
http://apps.cytoscape.org/apps/enrichmentmap
GNU Lesser General Public License v2.1
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Add button or way from the EM input panel to get the associated command #351

Closed risserlin closed 4 years ago

risserlin commented 5 years ago

similiar to GSEA functionaility

User inputs all the files for a given analysis and then clicks on a button in the interface to see what the command line version of everything they have entered into the interface would be so they can cut and copy it to what every scripting/environment they are using.

Check if you can use mastermap command instead of listing all files for each dataset.

When there are multiple dataset present but the files for each dataset are all over the place - recommend the user collates all analyses in one directory and use mastermap.