BaderLab / EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
http://apps.cytoscape.org/apps/enrichmentmap
GNU Lesser General Public License v2.1
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Add regular expression parameter to mastermap command #374

Closed risserlin closed 5 years ago

risserlin commented 5 years ago

Add the ability to select a subset of folders in the given directory to create a mastermap. For example, filter_by = "heart", only directories in the given directory where the names contains the word heart will be included in the mastermap.

mikekucera commented 5 years ago

I think its more intuitive to use the glob syntax that you typically use on the command line. For example if you want folders that start with gprofiler you would put pattern="gprofiler*". The equivalent regular expression would be ^gprofiler[^/]*$.