Show in Genemania - launch from different entry points on the same selection show different menus.

[risserlin]

When you launch "Show in Genemania" from right context menu there is no option to select leading edge even though only one node is selected.

For exact same selection: From right click context menu:

From Heatmap Setting - show in genemania

[veroniquevoisin]

To add to this ticket. I had observed this as well + the fact that when I did it from the right click, not all of the genes were in the genemania network, only the ones that were connected to each other were there but I had lost important genes from the nodes with no connection.

On Tue, Dec 22, 2020 at 12:14 PM Ruth Isserlin notifications@github.com wrote:

When you launch "Show in Genemania" from right context menu there is no option to select leading edge even though only one node is selected.

For exact same selection: From right click context menu: [image: genemania_query] https://user-images.githubusercontent.com/3842763/102915022-1e83ee80-444f-11eb-9a5d-b0e85cb3064c.png From Heatmap Setting - show in genemania [image: Screen Shot 2020-12-22 at 12 11 07 PM] https://user-images.githubusercontent.com/3842763/102914997-1330c300-444f-11eb-971c-c85440897e47.png

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[risserlin]

for show in string and show in pathway commons options as well

[mikekucera]

The reason its like this is because the leading edge was being calculated by the heat map based on the ranking that's selected in the heat map, and that information wasn't available in the context menu task. I can refactor to code so that the task can have access to the rankings, but I will have to add a UI element so the user can select which ranking to use.