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BaderLab / EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
http://apps.cytoscape.org/apps/enrichmentmap
GNU Lesser General Public License v2.1
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What is the difference between EnrichmentMap::Genes and EnrichmentMap::Enrichment_Genes #459

Closed risserlin closed 2 years ago

risserlin commented 3 years ago

only a fraction of Enrichment_genes are populated but all the genes look to be populated. confusing.

mikekucera commented 3 years ago

Enrichment_genes is populated only for signature nodes. It contains the genes from the Genes column but it filters out genes that are not in the gene universe of the original network.

This column isn't mentioned in the docs, so that needs to be fixed.