BaderLab / EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
http://apps.cytoscape.org/apps/enrichmentmap
GNU Lesser General Public License v2.1
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"EnrichmentMap - show in pathway commons Functionality" - overlap metrics not informative #480

Open risserlin opened 2 years ago

risserlin commented 2 years ago

the over and under expression used to colour the nodes are specific to the query as opposed to the dataset so if a given geneset has a max expression of 0.51 then that become the max expression by the legend which compared to the rest of the dataset might be a very poor differential expression but it is given the impression that it is high.