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BaderLab / EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
http://apps.cytoscape.org/apps/enrichmentmap
GNU Lesser General Public License v2.1
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Change "Fill Color" only change the edge color not node color #488

Closed Zejian-Wang closed 2 years ago

Zejian-Wang commented 2 years ago

Dear Administrator,

Thanks for the powerful software, I use EnrichmentMap to visualize result generated from g::profiler, I only have one data-set to visualize. image image

I want reverse the fill of dot-plot (set 0.0 as red and 0.05 as white), however when I change "Style->Fill Color-> Current Mapping" to my own setting, I found only the color in border changed, the fill of dot-plot doesn't change. image

How can we change the fill color in node? Were I select wrong bottom?

I'll be grateful if you can help us to fix this problem, thank you!

Best, ZJ

mikekucera commented 2 years ago

You need to remove the charts that are over the nodes.

In the main EnrichmentMap panel, go to the Style section, and set "Chart Data" to "--None--".

Zejian-Wang commented 2 years ago

Hi Mike,

Thanks for your quick reply! It's work for me, Thank you!

Best