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BaderLab / EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
http://apps.cytoscape.org/apps/enrichmentmap
GNU Lesser General Public License v2.1
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Add ability to create subnetwork from visible nodes. #493

Closed mikekucera closed 1 year ago

mikekucera commented 1 year ago

Users want to be able to use AutoAnnotate to annotate just the visible nodes/edges, especially when the use the filter sliders to highlight part of a network. Unfortunately clusterMaker does not have an option to ignore hidden nodes/edges. So as a workaround provide a quick action that creates a new subnetwork from the visible (or highlighted) nodes/edgs in an EnrichmentMap network. The user can then annotate that new subnetwork.

mikekucera commented 1 year ago

This is bogus. Autoannotate shoudl be able to ignore hidden edges.