When we build an enrichmentmap from Great, we can filter the results based on the hypergeometric q value or the binomial test q value. When the map is being built, there is a pop up menu that gives us the choice between hypergeometric or binomial. However it is not possible with the current Rcy3 command.
As a work around I'm thinking of building the map with qvalue of 1 and then filtering the nodes using the binomial qvalue by importing the original great result as node table.
When we build an enrichmentmap from Great, we can filter the results based on the hypergeometric q value or the binomial test q value. When the map is being built, there is a pop up menu that gives us the choice between hypergeometric or binomial. However it is not possible with the current Rcy3 command. As a work around I'm thinking of building the map with qvalue of 1 and then filtering the nodes using the binomial qvalue by importing the original great result as node table.