BaderLab / EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
http://apps.cytoscape.org/apps/enrichmentmap
GNU Lesser General Public License v2.1
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GSEA: can't build EM with one empty report #549

Closed veroniquevoisin closed 2 months ago

veroniquevoisin commented 3 months ago

I have done GSEA with a few genesets that are all have negative NES. Therefore the pos enrichment report file has no rows. In this case, EM can't build an enrichment map. No error message is delivered.

neg enrichment report file Screenshot 2024-08-02 at 4 05 39 PM

pos enrichment report file Screenshot 2024-08-02 at 4 05 12 PM