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BaderLab / GenomeClinic-PGX

Web application for clinical pharmacogenomic interpretation
GNU Lesser General Public License v3.0
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Genes not showing in PGX analysis #176

Closed patmagee closed 8 years ago

patmagee commented 9 years ago

There are several genes that appear to be missing when the PGX analysis is performed despite there being data uploaded to the database.

Once a patient is selected, the missing data is shown as "Notice, there was no genetic information found for this gene"

patmagee commented 9 years ago

the problem appears to arise when the defined haplotype array is set to null in getPossibleHaplotypes form pgx.js

patmagee commented 8 years ago

Resolved. getPossibleHaplotypes was not computing ALL possible haplotypes for heterozygous variants. instead it was returning only a subset, missing a large number of possibilities.