Closed patmagee closed 9 years ago
I have implemented the local storage of vcf files in a mongoDB after annotation.
Objectives 1-4 are complete.
Objectives left: 5
This is basically done and implemented.
Hi,patmagee ~ I cannot download some annotation database(ljb26_all and 1000G2014-sep) with the command perl annotate_variation.pl -buildver hg19 -downdb -webfrom annovar ljb26_all annovar_db/ . Could you tell me ,why couldn't I and how did you download them~ I will appreciate ,if you can send these files (ljb26_all and 1000G2014-sep) to me. Here is ,my email: 1053095150@qq.com.
In order to begin production of for the pharmacogenomics app as well as the discovery app we need to run a local instance of a mongoDB that can store annotated variant information in a queryable manner. The database should have individual tables for projects that contain a foreign key to point to a patient table. Each patient will receive a separate table to store their variants. Multiple projects can point to the same patient.
Specific points of this are: