Question about phasing accuracy

BaderLab / GenomeClinic-PGX

Web application for clinical pharmacogenomic interpretation

GNU Lesser General Public License v3.0

9 stars 2 forks source link

Question about phasing accuracy #99

Closed patmagee closed 9 years ago

patmagee commented 9 years ago

When files are phased on only 30 markers several kbs apart can we reliably gauge their accuracy or not?

patmagee commented 9 years ago

Ron responded back and said essentially we are losing accuracy on the pgx haplotypes phasing. however. However there is a trade off as phasing on larger files takes time

patmagee commented 9 years ago

This is a problem for the bioinformaticians producing the data, not us