BaderLab / SocialNetworkApp

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Unit tests failing - missing files in svn (for some of them) #93

Closed risserlin closed 9 years ago

risserlin commented 9 years ago

Running org.baderlab.csapps.socialnetwork.model.academia.AuthorTest Aug 13, 2015 12:16:54 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSetWhenIdentifierIsDefective(AuthorTest.java:146) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:16:57 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSet(AuthorTest.java:82) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:16:57 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSetMiddleInitial(AuthorTest.java:98) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:16:57 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSetWhenIdentifiedIsDefective(AuthorTest.java:130) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:16:57 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSetOnlyInitial(AuthorTest.java:114) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Tests run: 20, Failures: 0, Errors: 5, Skipped: 0, Time elapsed: 2.044 sec <<< FAILURE! - in org.baderlab.csapps.socialnetwork.model.academia.AuthorTest testFacultyIdentificationInSetWhenIdentifierIsDefective(org.baderlab.csapps.socialnetwork.model.academia.AuthorTest) Time elapsed: 2.022 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSetWhenIdentifierIsDefective(AuthorTest.java:148)

testFacultyIdentificationInSet(org.baderlab.csapps.socialnetwork.model.academia.AuthorTest) Time elapsed: 0.003 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSet(AuthorTest.java:84)

testFacultyIdentificationInSetMiddleInitial(org.baderlab.csapps.socialnetwork.model.academia.AuthorTest) Time elapsed: 0.002 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSetMiddleInitial(AuthorTest.java:100)

testFacultyIdentificationInSetWhenIdentifiedIsDefective(org.baderlab.csapps.socialnetwork.model.academia.AuthorTest) Time elapsed: 0.002 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSetWhenIdentifiedIsDefective(AuthorTest.java:132)

testFacultyIdentificationInSetOnlyInitial(org.baderlab.csapps.socialnetwork.model.academia.AuthorTest) Time elapsed: 0.002 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.AuthorTest.testFacultyIdentificationInSetOnlyInitial(AuthorTest.java:116)

Running org.baderlab.csapps.socialnetwork.model.academia.CollaborationTest Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec - in org.baderlab.csapps.socialnetwork.model.academia.CollaborationTest Running org.baderlab.csapps.socialnetwork.model.academia.InteractionTest Aug 13, 2015 12:16:57 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.InteractionTest.testTimesCitedSinglePub(InteractionTest.java:104) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:16:58 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.InteractionTest.testTimesCitedMultiplePub(InteractionTest.java:76) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 1.324 sec <<< FAILURE! - in org.baderlab.csapps.socialnetwork.model.academia.InteractionTest testTimesCitedSinglePub(org.baderlab.csapps.socialnetwork.model.academia.InteractionTest) Time elapsed: 1.085 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.InteractionTest.testTimesCitedSinglePub(InteractionTest.java:104)

testTimesCitedMultiplePub(org.baderlab.csapps.socialnetwork.model.academia.InteractionTest) Time elapsed: 0.09 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.InteractionTest.testTimesCitedMultiplePub(InteractionTest.java:76)

Running org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest Aug 13, 2015 12:16:58 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testUnidentifiedFaculty(IncitesParserTest.java:147) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:16:59 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testIgnoredRowsNonExistent(IncitesParserTest.java:122) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:17:00 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testDefectiveRowsExist(IncitesParserTest.java:84) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:17:01 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testIdentifiedFaculty(IncitesParserTest.java:106) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:17:01 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testInstutionRanking(IncitesParserTest.java:180) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:17:02 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testLoneAuthor(IncitesParserTest.java:135) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:17:02 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testTimesCited(IncitesParserTest.java:160) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Aug 13, 2015 12:17:02 PM org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap SEVERE: Exception occurred java.io.FileNotFoundException: /Users/risserlin/social_network_locations.sn (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.baderlab.csapps.socialnetwork.model.academia.IncitesInstitutionLocationMap.(IncitesInstitutionLocationMap.java:82) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:231) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testDefectiveRowsNonExistent(IncitesParserTest.java:95) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Tests run: 8, Failures: 0, Errors: 8, Skipped: 0, Time elapsed: 4.527 sec <<< FAILURE! - in org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest testUnidentifiedFaculty(org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest) Time elapsed: 1.399 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testUnidentifiedFaculty(IncitesParserTest.java:147)

testIgnoredRowsNonExistent(org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest) Time elapsed: 0.835 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testIgnoredRowsNonExistent(IncitesParserTest.java:122)

testDefectiveRowsExist(org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest) Time elapsed: 0.684 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testDefectiveRowsExist(IncitesParserTest.java:84)

testIdentifiedFaculty(org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest) Time elapsed: 0.494 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testIdentifiedFaculty(IncitesParserTest.java:106)

testInstutionRanking(org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest) Time elapsed: 0.628 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testInstutionRanking(IncitesParserTest.java:180)

testLoneAuthor(org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest) Time elapsed: 0.026 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testLoneAuthor(IncitesParserTest.java:135)

testTimesCited(org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest) Time elapsed: 0.032 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testTimesCited(IncitesParserTest.java:160)

testDefectiveRowsNonExistent(org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest) Time elapsed: 0.426 sec <<< ERROR! java.lang.NullPointerException: null at org.baderlab.csapps.socialnetwork.model.academia.Author.(Author.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parseAuthors(IncitesParser.java:433) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.PubSheetParser.endElement(PubSheetParser.java:163) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.parsePubsXLSX(IncitesParser.java:518) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParser.(IncitesParser.java:239) at org.baderlab.csapps.socialnetwork.model.academia.parsers.incites.IncitesParserTest.testDefectiveRowsNonExistent(IncitesParserTest.java:95)

Running org.baderlab.csapps.socialnetwork.model.academia.parsers.pubmed.PubMedParserTest Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2013May15 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2013May15 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2013May15 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2013May15 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2013May15 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2012Nov Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2012Nov Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2012Nov Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2012Nov Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2012Nov Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2012Nov Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2012Nov Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2012Nov Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication updateYearlyIntervalAttr WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2012Nov Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2004May Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2004May Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2004May Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Copublication constructEdgeAttrMap WARNING: Year could not be parsed from raw text: -1 Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Author updatePubMap WARNING: Year could not be parsed from raw text: 2004May Tests run: 2, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 1.006 sec <<< FAILURE! - in org.baderlab.csapps.socialnetwork.model.academia.parsers.pubmed.PubMedParserTest testTimesCited(org.baderlab.csapps.socialnetwork.model.academia.parsers.pubmed.PubMedParserTest) Time elapsed: 0.326 sec <<< FAILURE! java.lang.AssertionError: null at org.junit.Assert.fail(Assert.java:86) at org.junit.Assert.assertTrue(Assert.java:41) at org.junit.Assert.assertTrue(Assert.java:52) at org.baderlab.csapps.socialnetwork.model.academia.parsers.pubmed.PubMedParserTest.testTimesCited(PubMedParserTest.java:64)

Running org.baderlab.csapps.socialnetwork.model.academia.parsers.scopus.ScopusParserTest Aug 13, 2015 12:17:04 PM org.baderlab.csapps.socialnetwork.model.academia.Scopus parseScopusPubList WARNING: Unable to parse scopus line: Authors,Title,Year,Source title,Volume,Issue,Art. No.,Page start,Page end,Page count,Cited by,DOI,Link,Document Type,Source,EID Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec - in org.baderlab.csapps.socialnetwork.model.academia.parsers.scopus.ScopusParserTest Running org.baderlab.csapps.socialnetwork.model.academia.SearchTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.952 sec - in org.baderlab.csapps.socialnetwork.model.academia.SearchTest

Results :

Failed tests: PubMedParserTest.testTimesCited:64 null Tests in error: AuthorTest.testFacultyIdentificationInSet:84 » NullPointer AuthorTest.testFacultyIdentificationInSetMiddleInitial:100 » NullPointer AuthorTest.testFacultyIdentificationInSetOnlyInitial:116 » NullPointer AuthorTest.testFacultyIdentificationInSetWhenIdentifiedIsDefective:132 » NullPointer AuthorTest.testFacultyIdentificationInSetWhenIdentifierIsDefective:148 » NullPointer InteractionTest.testTimesCitedMultiplePub:76 » NullPointer InteractionTest.testTimesCitedSinglePub:104 » NullPointer IncitesParserTest.testDefectiveRowsExist:84 » NullPointer IncitesParserTest.testDefectiveRowsNonExistent:95 » NullPointer IncitesParserTest.testIdentifiedFaculty:106 » NullPointer IncitesParserTest.testIgnoredRowsNonExistent:122 » NullPointer IncitesParserTest.testInstutionRanking:180 » NullPointer IncitesParserTest.testLoneAuthor:135 » NullPointer IncitesParserTest.testTimesCited:160 » NullPointer IncitesParserTest.testUnidentifiedFaculty:147 » NullPointer

Tests run: 38, Failures: 1, Errors: 15, Skipped: 0