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BaderLab
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netDx
R package with netDx software and data for examples
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Tempdir issue
#93
savaylon
opened
1 year ago
1
Added compatibility to Java 17+
#92
shraddhapai
opened
1 year ago
0
Trouble with Reproducing Results in Publication
#91
pryabinin
closed
2 years ago
1
convertToMAE does not exist
#90
C-Gouveia
closed
2 years ago
2
Github actions for triggered test + Docker build
#89
shraddhapai
closed
2 years ago
0
Fixed URLs in fileCache.R
#88
writingindy
closed
2 years ago
0
Typo in Vignette 1's TL;DR Section
#87
writingindy
closed
2 years ago
1
Update filecache.R
#86
writingindy
closed
2 years ago
0
Error running netDx vignette 1 locally
#85
writingindy
opened
2 years ago
2
Added wrappers for ease of use
#84
shraddhapai
closed
3 years ago
0
predict() functionality, pkg adapted for BioC 3.12 release branch.
#83
shraddhapai
closed
3 years ago
0
predict() function allows application of trained model on independent dataset
#82
shraddhapai
closed
3 years ago
0
Error running netDx vignette locally
#81
ajfricke
opened
3 years ago
0
Added predict() function for validation of trained model
#80
shraddhapai
closed
3 years ago
0
Before rjava
#79
shraddhapai
closed
3 years ago
0
Smoothing sparse mutations / tSNE
#78
shraddhapai
closed
4 years ago
0
Release 3 11
#77
shraddhapai
closed
4 years ago
0
Release 3 11
#76
shraddhapai
closed
4 years ago
0
file separators now platform-specific - also detects java 12
#75
shraddhapai
closed
4 years ago
0
Bkfile fix
#74
shraddhapai
closed
4 years ago
0
Unit test ideas
#73
shraddhapai
closed
2 years ago
0
Plot psn
#72
shraddhapai
closed
4 years ago
0
Added pipeline for sparse genetic data
#71
shraddhapai
closed
4 years ago
0
Bioc fixes
#70
shraddhapai
closed
4 years ago
0
fixed examples
#69
shraddhapai
closed
4 years ago
0
Removed python dependency
#68
shraddhapai
closed
4 years ago
0
file.copy call changes hopefully resolve Win build errors
#67
shraddhapai
closed
4 years ago
0
cleanup mainly around dependencies
#66
shraddhapai
closed
4 years ago
0
Updated to conform to BioC package guidelines
#65
shraddhapai
closed
4 years ago
1
Error handeling when sparsifying in makePSN_NamedMatrix.R
#64
AnneKrogh
opened
5 years ago
0
Passes BioC checks major changes
#63
shraddhapai
closed
5 years ago
1
Ready for BioC submission
#62
shraddhapai
closed
5 years ago
1
wiki: add page showing how built-in similarity functions can be used.
#61
shraddhapai
opened
5 years ago
0
Genemania integrated
#60
philmaweb
closed
5 years ago
1
R cy3 migration
#59
shraddhapai
closed
5 years ago
1
Rename functions
#58
shraddhapai
closed
5 years ago
1
Creating GM db - option to suppress print messages
#57
shraddhapai
opened
5 years ago
1
EM : AutoAnnotate leaves stray cluster bubbles
#56
shraddhapai
closed
4 years ago
1
New functionality and example data
#55
shraddhapai
closed
6 years ago
0
Viz for prefiltering/missingness
#54
shraddhapai
opened
6 years ago
0
Net dx qc
#53
shraddhapai
closed
6 years ago
0
PSN diagnostic viz wishlist
#52
shraddhapai
opened
6 years ago
0
GMmemory should be settable for runPredictor_nestedCV
#51
shraddhapai
closed
5 years ago
1
Change numTrainSamp to numGMQueryReturn in GM_runCV_featureSet
#50
shraddhapai
closed
4 years ago
1
cliqueFilterNets.R number of interactions are log10-transformed
#49
shahahmad
closed
5 years ago
1
plotAllResults.R writes wrong list to file
#48
shahahmad
closed
5 years ago
1
callFeatSel.R counts pathway name as feat sel network. This should not have any effect on the final results.
#47
shahahmad
closed
4 years ago
0
Write use case for SNV data
#46
shraddhapai
closed
4 years ago
0
netDx nestedCV predictor wish list
#45
shraddhapai
opened
6 years ago
0
Plotting results wish list
#44
shraddhapai
closed
6 years ago
0
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