Some characters are converted into question marks when a file is created for the corresponding profile (e.g. pathways containing "naïve"). Currently this char needs to be manually substituted to ensure no mismatches between pathway names in the input list and the filenames.
There should be a catch-all substitution in R when the pathway list is first generated (part of cleanPathwayNames) to avoid this situation.
shraddhapai
commented
5 years ago
Some characters are converted into question marks when a file is created for the corresponding profile (e.g. pathways containing "naïve"). Currently this char needs to be manually substituted to ensure no mismatches between pathway names in the input list and the filenames. There should be a catch-all substitution in R when the pathway list is first generated (part of cleanPathwayNames) to avoid this situation.