Min functioning pytorch model

BaderLab / saber

Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not stable.

https://baderlab.github.io/saber/

MIT License

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Min functioning pytorch model #118

Closed JohnGiorgi closed 5 years ago

JohnGiorgi commented 5 years ago

This pull request adds a functioning BERT model for NER (implemented in PyTorch). It likely caused some issues with existing code for training BiLSTM-CRF, hence why it is being merged into development.

CLAassistant commented 5 years ago

Thank you for your submission, we really appreciate it. Like many open source projects, we ask that you all sign our Contributor License Agreement before we can accept your contribution.
1 out of 2 committers have signed the CLA.

:white_check_mark: JohnGiorgi
:x: jswu18
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coveralls commented 5 years ago

Pull Request Test Coverage Report for Build 306

0 of 0 changed or added relevant lines in 0 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage remained the same at ?%

Totals
Change from base Build 303:	0.0%
Covered Lines:
Relevant Lines:	0

💛 - Coveralls

JohnGiorgi commented 5 years ago

Unit tests are passing, but cryptic error from tox is causing build to break... merge for now.