Update BERT based models to use new PyTorch Transformer API

BaderLab / saber

Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not stable.

https://baderlab.github.io/saber/

MIT License

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Update BERT based models to use new PyTorch Transformer API #159

Closed JohnGiorgi closed 5 years ago

JohnGiorgi commented 5 years ago

The PyTorch Transformer Library was recently updated with breaking changes. Update our code to match the new API and bump the PyTorch Transformer dependency version in Saber.