Add grounding capabilities to Saber

BaderLab / saber

Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not stable.

https://baderlab.github.io/saber/

MIT License

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Add grounding capabilities to Saber #61

Closed IgorRodchenkov closed 6 years ago

IgorRodchenkov commented 6 years ago

Added utils/grounding_utils.py and tests/test_grounding_utils.py. Using the UniProt web api, it adds 'xrefs' to the Saber document (for each ent in ents it creates 'xrefs' key with values like [{'id':'P12345','organism-id':'9606',..},..])

CLAassistant commented 6 years ago

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