BaderLab / saber

Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not stable.
https://baderlab.github.io/saber/
MIT License
102 stars 17 forks source link

⬆️ Bump spacy from 2.0.13 to 2.0.18 #99

Closed dependabot-preview[bot] closed 5 years ago

dependabot-preview[bot] commented 5 years ago

Bumps spacy from 2.0.13 to 2.0.18.

Release notes *Sourced from [spacy's releases](https://github.com/explosion/spaCy/releases).* > ## v2.0.18: Alpha support for Catalan and dependency fixes > ## ✨ New features and improvements > > * **NEW:** Alpha tokenization support for [Catalan](spacy/lang/ca). > * Improve [French](spacy/lang/fr) tokenization. > * Fix `regex` pin to harmonise dependencies with conda. > * Fix `msgpack` pin. > * Update tests for `pytest` 4.0. > > ## πŸ”΄ Bug fixes > > * Fix issue [#2933](https://github-redirect.dependabot.com/explosion/spaCy/issues/2933): Correct mistake in `is_ascii` documentation. > * Fix issue [#2976](https://github-redirect.dependabot.com/explosion/spaCy/issues/2976): Fix bug where `Vocab.prune_vectors` did not use `batch_size`. > * Fix issue [#2986](https://github-redirect.dependabot.com/explosion/spaCy/issues/2986): Correctly document when `Span.ents` was added. > * Fix issue [#2995](https://github-redirect.dependabot.com/explosion/spaCy/issues/2995), [#2996](https://github-redirect.dependabot.com/explosion/spaCy/issues/2996): Fix `msgpack` pin. > > ## πŸ“– Documentation and examples > > * Fix various typos and inconsistencies. > > ## πŸ‘₯ Contributors > > Thanks to [**mpuig**](https://github.com/mpuig), [**ALSchwalm**](https://github.com/ALSchwalm), [**bpben**](https://github.com/bpben), [**svlandeg**](https://github.com/svlandeg) and [**wxv**](https://github.com/wxv) for the pull requests and contributions. > > ## v2.0.17: Fix NER segfaults and various small issues > ## ✨ New features and improvements > > * Make `max_length` of input text inclusive. > * Raise error when setting overlapping entities as `doc.ents`. > * Improve French lemmatization and check if a word is in one of the regular lists specific to each part-of-speech tag. > > ## πŸ”΄ Bug fixes > > * Fix issue [#1581](https://github-redirect.dependabot.com/explosion/spaCy/issues/1581), [#1969](https://github-redirect.dependabot.com/explosion/spaCy/issues/1969), [#1986](https://github-redirect.dependabot.com/explosion/spaCy/issues/1986): Fix out-of-bounds access in NER training that'd cause segmentation fault. > * Fix issue [#2924](https://github-redirect.dependabot.com/explosion/spaCy/issues/2924): Prevent problem where `displacy` arcs would receive the same IDs in Jupyter notebooks, causing weirdly positioned arc labels. > * Fix issue [#2948](https://github-redirect.dependabot.com/explosion/spaCy/issues/2948): Fix problem with symlink creation on Windows. > > ## πŸ“– Documentation and examples > > * Fix various typos and inconsistencies. > * Update [spaCy Universe](https://spacy.io/universe) with new projects. > * Add [example script](examples/pipeline/fix_space_entities.py) showing a fix-up rule for whitespace entities like `'\n'`. > > ## πŸ‘₯ Contributors > > Thanks to [**digest0r**](https://github.com/digest0r), [**BramVanroy**](https://github.com/BramVanroy), [**grivaz**](https://github.com/grivaz), [**wannaphongcom**](https://github.com/wannaphongcom), [**mikelibg**](https://github.com/mikelibg), [**danielhers**](https://github.com/danielhers), [**frascuchon**](https://github.com/frascuchon), [**mauryaland**](https://github.com/mauryaland) and [**cicorias**](https://github.com/cicorias) for the pull requests and contributions. > > ## v2.0.16: Fix msgpack-numpy pin > ## πŸ”΄ Bug fixes > > ... (truncated)
Commits - [`bbaca99`](https://github.com/explosion/spaCy/commit/bbaca991baee5d2c21cd48a9da535b7d2144ecda) Set version to v2.0.18 - [`05b2336`](https://github.com/explosion/spaCy/commit/05b2336ffaa6bf8a4218f763c4e9505fa387e1e5) Try again to fix OSX build - [`e1a4b0d`](https://github.com/explosion/spaCy/commit/e1a4b0d7f7d9e860dce794e07aadedea193d470e) Set version to v2.0.18.dev1 - [`413530b`](https://github.com/explosion/spaCy/commit/413530b269638327ed1321e6755af9a486e3c002) Set version to 2.0.18 - [`24d5287`](https://github.com/explosion/spaCy/commit/24d52876e1a09cf8041da282b93e688a1d2c5a6d) Set version to v2.0.18.dev0 - [`4895b2e`](https://github.com/explosion/spaCy/commit/4895b2e8302ebffca39a19d091206e45ce3725b1) Merge branch 'master' of https://github.com/explosion/spaCy - [`3f16af1`](https://github.com/explosion/spaCy/commit/3f16af123e66537cc98eb827bc916090032d2dc0) Try to fix OSX build error - [`61abb1e`](https://github.com/explosion/spaCy/commit/61abb1ef70932a32184914ae5399d22469c449c1) Remove msgpack dependency, to try to fix [#2995](https://github-redirect.dependabot.com/explosion/spaCy/issues/2995) - [`add6469`](https://github.com/explosion/spaCy/commit/add6469225d9b607e477db817e64c1b724aaabbc) Add "new in v2.0.12" note to Span.ents (closes [#2986](https://github-redirect.dependabot.com/explosion/spaCy/issues/2986)) - [`c9bdeaf`](https://github.com/explosion/spaCy/commit/c9bdeafbc7229415e8e596a3c12306a7c9058d6c) Don't run weird failing test for now - Additional commits viewable in [compare view](https://github.com/explosion/spaCy/compare/v2.0.13...v2.0.18)


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JohnGiorgi commented 5 years ago

Closing, NeuralCoref and spacy>=2.0.14 don't play nice together.

dependabot-preview[bot] commented 5 years ago

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.