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Baohua-Chen / variantCalling

Scripts used for variant calling with GATK. Includes three different versions which can be used in standalone, clustered, and GPU servers.
GNU General Public License v3.0
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GPU computing efficiency #1

Open dahaigui opened 2 years ago

dahaigui commented 2 years ago

We recently needed to use GATK to call a batch of variants, and want to try to use your GPU script, how is it used?

Baohua-Chen commented 2 years ago

You need install nvidia parabricks pipeline. The script is based on it. And it is not free you may need to buy a lisence.

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-----------------------------------------------------------------Baohua Chen, PhDCollege of Ocean and Earth SciencesXiamen UniversityRoom B2-311, Zhoulongquan Building, Xiangan CompusXiamen, Fujjian, ChinaZip code: 361102Email: @.***

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