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BarasLab / miRge

miRge is a logical, ultrafast, small RNA-seq solution to process samples in a highly multiplexed fashion, resulting in dramatically decreased computational requirements when processing sets of samples in a single run.
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Indices and sample files at jh.app.box.com not found #16

Open emsisson opened 2 years ago

emsisson commented 2 years ago

Page https://baraslab.github.io/miRge/ provides links to miRge.seqLibs and miRge.samples at jh.app.box.com:

However, attempting to download these files with wget resulted in messages like the following:

$ wget https://jh.box.com/s/qai6y7vappa3wqrdgwhmg7k7f3mhd11o --2021-12-15 07:50:08-- https://jh.box.com/s/qai6y7vappa3wqrdgwhmg7k7f3mhd11o Resolving jh.box.com (jh.box.com)... 107.152.29.197 Connecting to jh.box.com (jh.box.com)|107.152.29.197|:443... connected. HTTP request sent, awaiting response... 301 Moved Permanently Location: https://jh.app.box.com/s/qai6y7vappa3wqrdgwhmg7k7f3mhd11o [following] --2021-12-15 07:50:08-- https://jh.app.box.com/s/qai6y7vappa3wqrdgwhmg7k7f3mhd11o Resolving jh.app.box.com (jh.app.box.com)... 107.152.26.201 Connecting to jh.app.box.com (jh.app.box.com)|107.152.26.201|:443... connected. HTTP request sent, awaiting response... 404 Not Found 2021-12-15 07:50:08 ERROR 404: Not Found.

Are these files available elsewhere?

Can we use miRge without these files?

mhalushka commented 2 years ago

miRge 1.0 is no longer being supported. Please use miRge 3.0 https://anaconda.org/bioconda/mirge3, https://mirge3.readthedocs.io/en/latest/ which is an improved version of the software.

emsisson commented 2 years ago

Greetings,

Thank you for that information. I will check those sites.

Regards, Eric

From: Marc Halushka @.> Reply-To: BarasLab/miRge @.> Date: Wednesday, December 15, 2021 at 08:26 To: BarasLab/miRge @.> Cc: Eric Sisson @.>, Author @.***> Subject: [EXT] Re: [BarasLab/miRge] Indices and sample files at jh.app.box.com not found (Issue #16)

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miRge 1.0 is no longer being supported. Please use miRge 3.0 https://anaconda.org/bioconda/mirge3https://urldefense.com/v3/__https:/anaconda.org/bioconda/mirge3__;!!PfbeBCCAmug!3yaTuUQgDu5tF2j5D7l_XuiWfXJoRhErqflarrC0SKS-l5-fnNzsZS7xMHRNnw$, https://mirge3.readthedocs.io/en/latest/https://urldefense.com/v3/__https:/mirge3.readthedocs.io/en/latest/__;!!PfbeBCCAmug!3yaTuUQgDu5tF2j5D7l_XuiWfXJoRhErqflarrC0SKS-l5-fnNzsZS7owd9bQw$ which is an improved version of the software.

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