I am trying to run clust with the replicate file replicates_clust.txt, and am receiving the error below. As far as I can see the format agrees with the example file and running without the replicate file is progressing to the next steps (still running). Is there something I missed?
/===========================================================================\
| Clust |
| (Optimised consensus clustering of multiple heterogenous datasets) |
| Python package version 1.12.0 (2019) Basel Abu-Jamous |
+---------------------------------------------------------------------------+
| Analysis started at: Sunday 08 November 2020 (18:10:59) |
| 1. Reading dataset(s) |
Traceback (most recent call last):
File "/scratch/al862/envs/myroot/bin/clust", line 10, in
sys.exit(main())
File "/home/al862/.local/lib/python3.6/site-packages/clust/main.py", line 103, in main
args.cs, args.np, args.optimisation, args.q3s, args.basemethods, args.deterministic)
File "/home/al862/.local/lib/python3.6/site-packages/clust/clustpipeline.py", line 92, in clustpipeline
(replicatesIDs, conditions) = io.readReplicates(replicatesfile, datapath, datafiles, replicates)
File "/home/al862/.local/lib/python3.6/site-packages/clust/scripts/io.py", line 125, in readReplicates
conditions[c] = line[1:]
TypeError: 'filter' object is not subscriptable
I am trying to run clust with the replicate file replicates_clust.txt, and am receiving the error below. As far as I can see the format agrees with the example file and running without the replicate file is progressing to the next steps (still running). Is there something I missed? /===========================================================================\ | Clust | | (Optimised consensus clustering of multiple heterogenous datasets) | | Python package version 1.12.0 (2019) Basel Abu-Jamous | +---------------------------------------------------------------------------+ | Analysis started at: Sunday 08 November 2020 (18:10:59) | | 1. Reading dataset(s) | Traceback (most recent call last): File "/scratch/al862/envs/myroot/bin/clust", line 10, in
sys.exit(main())
File "/home/al862/.local/lib/python3.6/site-packages/clust/main.py", line 103, in main
args.cs, args.np, args.optimisation, args.q3s, args.basemethods, args.deterministic)
File "/home/al862/.local/lib/python3.6/site-packages/clust/clustpipeline.py", line 92, in clustpipeline
(replicatesIDs, conditions) = io.readReplicates(replicatesfile, datapath, datafiles, replicates)
File "/home/al862/.local/lib/python3.6/site-packages/clust/scripts/io.py", line 125, in readReplicates
conditions[c] = line[1:]
TypeError: 'filter' object is not subscriptable