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BauerLab / VariantSpark

VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
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SNAPSHOT.jar is not getting created #2

Closed Pavan637 closed 8 years ago

Pavan637 commented 8 years ago

Hello all, I have followed steps given here for buildng Variant Spark. But i am not able to see any SNAPSHOT.jar file being created in target folder. Kindly suggest in this regard.

Pavan637 commented 8 years ago

I am getting follwoing error, when i run variantspark.sh file without building. ./variantspark.sh Warning: Master yarn-client is deprecated since 2.0. Please use master "yarn" with specified deploy mode instead. MASTER: local Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 16 at au.csiro.obr17q.variantspark.PopulationMap$$anonfun$2.apply(PopulationMap.scala:33) at au.csiro.obr17q.variantspark.PopulationMap$$anonfun$2.apply(PopulationMap.scala:29) at scala.collection.immutable.List.map(List.scala:273) at au.csiro.obr17q.variantspark.PopulationMap.(PopulationMap.scala:29) at au.csiro.obr17q.variantspark.VcfClustering$.main(VcfClustering.scala:74) at au.csiro.obr17q.variantspark.VcfClustering.main(VcfClustering.scala) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:729) at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:185) at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:210) at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:124) at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)

Kindly suggest

Pavan637 commented 8 years ago

Hello Instead of "mvn build", try "mvn package" You will be able to see jar files created in target folder.