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BauerLab / ngsane

Analysis Framework for Biological Data from High Throughput Experiments

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Open allPowerde opened 11 years ago

allPowerde commented 11 years ago

A changed tophat/runnow.tmp has no influence on the downstream stages (i.e. cufflinks, htseqcount, bamann).

currently all runnow.tmps need to be edited when RUNTOPHATCUFFHTSEQ is run in keep+armed mode

A better way would be to somehow propagate that the shot-list though

allPowerde commented 11 years ago

additional symptom of this is that cufflinks waits on the wrong jobs because tophat/runnow.tmp has a different length than cufflinks/runnow.tmp