BauerLab / ngsane

Analysis Framework for Biological Data from High Throughput Experiments
Other
34 stars 22 forks source link

Create bam2fastq module #14

Open BauerLab opened 11 years ago

BauerLab commented 11 years ago

picard requires reads to have unique names (http://www.biostars.org/p/59521/) so multimappers need to be removed. Which means resolvepairs (https://github.com/BauerLab/resolvepairs) needs to get an extra option to drop reads rather than give them unique readnames.