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Bayer-Group
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cellenium
Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).
MIT License
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5
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cleanup
#46
carsten-jahn
closed
10 months ago
0
Develop
#45
carsten-jahn
closed
10 months ago
0
Bump postcss from 8.4.24 to 8.4.31 in /client
#44
dependabot[bot]
opened
11 months ago
0
Bump graphql from 16.6.0 to 16.8.1 in /client
#43
dependabot[bot]
opened
11 months ago
0
Bump @adobe/css-tools from 4.0.1 to 4.3.1 in /client
#42
dependabot[bot]
opened
1 year ago
0
Bump vega-functions from 5.13.0 to 5.13.2 in /client
#41
dependabot[bot]
opened
1 year ago
0
Aws study import
#40
carsten-jahn
closed
1 year ago
0
Bump word-wrap from 1.2.3 to 1.2.4 in /client
#39
dependabot[bot]
opened
1 year ago
0
Bump semver from 6.3.0 to 6.3.1 in /postgraphile
#38
dependabot[bot]
opened
1 year ago
0
Bump semver from 6.3.0 to 6.3.1 in /client
#37
dependabot[bot]
opened
1 year ago
0
Bump tough-cookie from 4.1.2 to 4.1.3 in /client
#36
dependabot[bot]
opened
1 year ago
0
expression plots: show amount of samples next to the boxes / violins
#35
carsten-jahn
closed
2 months ago
1
expression plots: option to combine 'equivalent' annotations in one category
#34
carsten-jahn
opened
1 year ago
0
cross-study heatmap should differentiate "low expression" vs. "cell type not measured at all in this study"
#33
carsten-jahn
closed
11 months ago
1
extend gene IDs, symbols, descriptions with further species
#32
carsten-jahn
opened
1 year ago
0
Bump webpack from 5.75.0 to 5.76.1 in /client
#31
dependabot[bot]
opened
1 year ago
0
multi omics to main
#30
carsten-jahn
closed
1 year ago
0
small support python package for study preparation
#29
carsten-jahn
opened
1 year ago
0
study list filter: search for words in title, description; Pubmed ID
#28
carsten-jahn
closed
12 months ago
1
Bump vega from 5.22.1 to 5.23.0 in /client
#27
dependabot[bot]
opened
1 year ago
0
Bump vega-functions from 5.13.0 to 5.13.1 in /client
#26
dependabot[bot]
closed
1 year ago
1
user-defined cell annotations: no DEG calculation for multi-omics (h5mu) studies
#25
carsten-jahn
opened
1 year ago
0
multiple data layers (e.g. another matrix with imputed values)
#24
carsten-jahn
opened
1 year ago
0
log of pvalues = 0 is inf, so they are not shown in volcano plot
#23
andreassteffen
opened
1 year ago
0
for generated cell types using the user annotation the generated DEGs are not shown
#22
andreassteffen
closed
1 year ago
0
user requested gene correlation does not yet work for multiomics
#21
andreassteffen
opened
1 year ago
0
clustering for the rna part of the PBMC citeSeq data set looks wrong although correct in jupyter
#20
andreassteffen
closed
1 year ago
1
Develop
#19
carsten-jahn
closed
1 year ago
0
Bump undici from 5.14.0 to 5.19.1 in /client
#18
dependabot[bot]
opened
1 year ago
0
display species in study overview card
#17
carsten-jahn
closed
1 year ago
0
remove annotation select in user annotation view
#16
andreassteffen
closed
1 year ago
0
add CITE-Seq and ATAC-Seq studies
#15
andreassteffen
closed
1 year ago
1
user prepared study upload
#14
andreassteffen
closed
9 months ago
0
filter studies before fetching data for cross-study view, e.g. filter by tissue
#13
andreassteffen
closed
1 year ago
0
user annotation coexpression plot should show a (0,0) sample for selecting this case
#12
andreassteffen
closed
1 year ago
0
make the autocomplete nicer so they show the ontology type
#11
andreassteffen
closed
1 year ago
0
enable filtering by cell ontology and species
#10
andreassteffen
closed
1 year ago
0
align ts-vector vs ts-query dictionary (e.g. mouse)
#9
andreassteffen
closed
1 year ago
0
make the correlation values of pairwise scatter and correlation mining correspond (do not remove 0)
#8
andreassteffen
closed
1 year ago
0
scale violinplot down to 100% of availabe space
#7
andreassteffen
closed
1 year ago
1
color change of selected annotation group after gene expression is plotted on top (e.g. pancreas data set, with CellO CD14-positive and VCAN gene)
#6
andreassteffen
closed
1 year ago
0
open task prior to release
#5
andreassteffen
closed
1 year ago
0
Develop
#4
carsten-jahn
closed
1 year ago
0
docs, add optional row-level security on study level
#3
carsten-jahn
closed
1 year ago
0
frontend in docker
#2
carsten-jahn
closed
1 year ago
0
Develop
#1
carsten-jahn
closed
1 year ago
0