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Bayer-Group / tiffslide

TiffSlide - cloud native openslide-python replacement based on tifffile
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anonymization options? #10

Open delta2golf opened 2 years ago

delta2golf commented 2 years ago

Thank you for creating this library. It is very helpful. Is it possible to include anonymization options? The anonymization tool below remove associated images such as label, but does not remove/change metadata for example aperio.ScanScope ID, aperio.Date

https://github.com/bgilbert/anonymize-slide

ap-- commented 2 years ago

Hi @delta2golf,

Thanks 😊 It's always nice to hear that tiffslide is useful to users ❤️

Now regarding your question about anonymization: Currently this is out of scope for tiffslide, but we will soon release an open-source whole slide image dataset library that will include anonymization utilities.

Let's keep this issue open, and I will reply here once we release that library.

Cheers, Andreas 😃

sarthakpati commented 2 years ago

Unsure if you folks are still working on this, but our group has extended the anonymize-slide package. You can find more details on usage here: https://cbica.github.io/GaNDLF/usage#anonymize-data and the actual script is https://github.com/CBICA/GaNDLF/blob/master/gandlf_anonymizer