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Bayer-Group / tiffslide

TiffSlide - cloud native openslide-python replacement based on tifffile
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Support for axes=='YX' and uint16 svs files. #46

Closed One-sixth closed 2 years ago

One-sixth commented 2 years ago

Hello. I have some svs files whose axes are 'YX' and dtype is uint16. Openslide doesn't support opening them, but tiffslide can open them with a little modification.

I opened a PR.

ap-- commented 2 years ago

Interesting. Would it be possible to share one of those svs files for tests?

One-sixth commented 2 years ago

@ap-- The original svs file I can't share. I generated an svs image with the same format. 'YX' and uint16. It can also help with troubleshooting. a9.zip

ap-- commented 2 years ago

Hi @One-sixth

Thanks for sharing the generated test file :heart:

Would it be possible to share the output of tiffinfo of an original file? What I'm specifically interested in is the original Aperio ImageDescription and the original image format. (feel free to mask out certain information if you consider it confidential)

One-sixth commented 2 years ago

@ap-- Here is the output of a raw svs file. (Some user information and time have been masked) info.txt

ap-- commented 2 years ago

Closed via #47